I have a question: I will be using the ZF for both the Website Frontend as well as for the CMS. And i want to separate both even with my folder structure. These two application will depend on the framework. How can i separate both assuming i use the folder structure below. Do I have to have two separate bootstraps: one for the CMS folder and the other for the frontend?

/
|- /data
| |- /logs
| |- /uploaded-files
| |- /tmp
|- /htdocs
|- /include
| |- /Controllers
|- /templates